Monday, March 18, 2013

VIDEO BLOG

Here I talk about the process and detail my inspiration. It's all explained in the video, but with this project my main goal was to bring a complicated science to my home. Though it may seem like it, I've really simplified the process by synthesizing a lot of research.

 

Halfway There!

This week has been full of lots of fun research and concluded in me finishing my first five jars. But I'll start at the beginning. I spent the week learning about these chemicals called Plant Growth Hormones, or PGRs. They're pretty self-explanatory, they are natural chemicals found in plants that make them grow. Certain combinations either make plants grow new shoots or roots. In real tissue culture, you can buy ones made in a lab. However, I'm doing cheap tissue culture! So what I found was that coconut water contains a number of these PGRs, but is extremely unreliable. Here's a study I found explaining coconut water's various chemicals. Here's one showing how it applies to tissue culture. It was some really interesting reading. If you want to learn about PGRs, I found thisthis, and this to be very helpful. In the end, I determined that seaweed extract would actually be the most consistent supply of PGRs, but I ended up not finding any. Maybe I'll make a new media over spring break that contains some seaweed. It'll help if I transplant some of the samples and make stimulate some real growth.


So now onto the real news. I continued to play around with corn starch, and cooked three jars with different amounts of it in my pressure cooker for about 10 minutes. I determined that 6 teaspoons per 1/2 cup of water worked the best.

4 teaspoons per 1/2 cup water. Notice the clear spot of liquid.
5 teaspoons per 1/2 cup water. Notice the small dots of liquid.
6 teaspoons per 1/2 cup water. Notice the white jelly goodness.

A quick note about pressure cookers. They are very thick metal pots that have a very tight lock on the top. They have one valve to let just enough steam out to maintain 15psi. They are HORRIFYING. The steam screams out of the valve, and I refused to stay in the same room as it. Pressurized shrapnel from glass jars would not feel good ripping through my face if it blew up. I dropped a baby food jar this weekend, and when they shatter, they are sharp.

Pressure Cooker from Drew E on Vimeo.


After these tests, it was time for the real deal. I mixed my nutrient liquid with some corn starch (see video blog), and added it to the pressure cooker. I cooked it on high for about 2 minutes and then let is simmer to make a total of 30 minutes. I pulled the jars out, and the liquid had gelled perfectly! One jar opened as I pulled it out, which is a big no-no because any bacteria that entered the jar can quickly spoil it. But I closed it up again and am going to leave it, just so I know what contamination looks like. The other jars I covered with Saran-wrap to further seal them and keep out any nasties. I plan to sterilize the tissue samples and add them to the jars on Tuesday. I still have five more jars to prepare for Spring Break with the high-quality gel, agar.

WOOHOOOOO!!!

Monday, March 11, 2013

A Sticky Situation


This weekend I played with corn. Cornstarch to be exact. I picked up two $1 packages at Walmart and was playing around with mixing different concentrations. I know cornstarch as a fun camp activity I did with kids in Honduras. When you add enough cornstarch to water, it appears to be a liquid, but when it undergoes stress compacts into a rigid solid. I know that gravy recipes call for cornstarch to thicken them. So, I added about 10 teaspoons of cornstarch to 1/2 cup of water, and microwaved it. Lo and behold, it thickened into a lovely gel. Well, I can't say lovely. It was a disgusting pale white color with a layer of moist cornstarch that had not gelled on top. I played around with it some more, and found that 5 teaspoons in 1/2 cup of water made a nice gel. One problem I could see was that as I microwaved it, the gel heated and rose up considerably. When it cooled it continued to stick on the sides of the glass jar, while the center collapsed. It was pretty gross, and a very uneven surface. I'm hoping the pressure cooker heats it evenly so that I don't have this problem, and have to smooth it out after I sterilize it. Also, the white color makes it look like it is already contaminated with bacteria. It will be really hard to spot infection if it occurs, unless I dye it some ridiculous neon color. Which I will likely end up doing.


If corn sneezed, this would come out.

Speaking of the pressure cooker, I finally assembled it! It looks very nice. I have to rinse all the parts before I can safely use it, but from what I can see it seals very well.


I'm collecting some jars, and may have to buy some cheap baby food. I currently have 5 jars, and would like 10-15.

I was told that this project is confusing, and I use a lot of botanical jargon. So here I will attempt to do a basic explanation of tissue culture. It is a scientific concept though, so I can not avoid a few terms.

Tissue culture is used to clone plants. This is not done the DNA-splicing techniques that are often associated with cloning labs. Cells are able to rapidly divide and preserve their DNA and traits in a process called asexual (without sex) reproduction. When this happens, exact copies are made of the original cells. In a normal environment, plant cells, or tissue, cannot grow very fast because of disease, contaminants, being eaten, etc. Additionally, plant tissue needs a lot of food to grow and divide at a fast pace.

What tissue culture aims to do is provide the perfect environment for cell division and plant growth. It does this by placing a tissue sample in a sterile environment, typically a glass jar. This jar has a sterile gel in it that is firm enough to allow the tissue to anchor itself and grow, while also supplying all of the energy and nutrients necessary for growth. When these two factors are present, the cells can grow and divide uninhibited.

As a tissue sample (a leaf for instance) divides, it forms a clump of cells called a callus. New growth points (the center of a plant where leaves and roots come from) emerge, and generate dozens or even hundreds of new plants. These are then divided and places in their own jars, where they will again divide. Different chemicals can be added (like the root hormone I mentioned earlier) that will stimulate certain growth in the plants to further establish them. When the plants are large enough they are removed from the jars and gradually introduced to real growing environments.


Now here is a description of the materials I am using:
    A plastic box as a pseudo-sterile hood: By cutting a hole in the side and spraying it down with bleach, this place becomes a safe place to work free of contamination. Bacteria and mold spores cannot "fall" into the jars because the top is covered.

      91% isopropyl alcohol70% isopropyl alcohol, 3% Hydrogen peroxide, 8.5% bleach: All of these are used to sterilize the tissue and cultures. Different combinations are used to effectively kill everything bad.

        Pressure cooker: Pressure cookers do not let steam evaporating inside to escape, creating an environment with 15 pounds per square inch of force and high temperatures. These conditions sterilize things that would be hard to clean with chemicals.


        20-20-20 fertilizer: 20-20-20 is a ratio of Nitrogen-Phosphorous-Potassium, which are three major nutrients plants need for good growth. It also has a lot of other good things.

        Multivitamin: Another great nutrient source that covers all the bases.

        Inositol: I honestly don't know exactly what this does. Claims say that it is a natural chemical that aids in nutrient absorption by cells. It may help the tissue samples to absorb the food I'm providing and help them grow.

        Agar/cornstarch: These are natural ingredients that, when heated in a mixture of water, will turn into gels. This provides a surface that the tissue samples can anchor and grow into, as well as easily passing on the nutrients to the growing cells.


        hope this helps!

        Wednesday, March 6, 2013

        CULTIVAR NEWS!!!

        WOOHOOOOOO!!!

        So I emailed the International Carnivorous Plant Society, and received a reply from the person in charge of cultivar registration. It went like this:


        Dear Drew,
        Stability of cultivar characteristics is one of the main issues in registering cultivar names (NB: we are registering names, not plants) but this stability refers to the phenotype only and not to lineage nor to procedures of generation or maintenance. The means of propagation may be a useful recommendation in the context of the description but it is not mandatory that a plant was generated using a specific method in order to apply a specific cultivar name to this plant because the definition and meaning of any cultivar name is governed exclusively by the phenotype described in the original publication. In your case this means you must be careful to mention everything you consider essential for making your new cultivar a special plant in the description of said cultivar. Irrespective of how other plants may have been generated, if they meet these criteria of your description, they may be given the name you propose in the description.
        If the progeny of self-pollinated plants show variation in the characteristics that define the cultivar, only the plants that match the original description do belong to the cultivar. The remaining plants that deviate from the original description do not belong to the cultivar although they share the same lineage from a technical perspective. This may generate problems if seeds and not mature plants are traded because the defining characteristics may not be detectable in the seeds. One way to deal with this situation is to declare the seed batch in question as "seeds from selfing [Your Cultivar Name]", or similar.


        Do you know what this means??? It basically means that when you register a plant as a cultivar, you are registering the appearance of a plant, not a specific individual and its genes. Therefore, any plant in the world that looks like the description is now that cultivar. By that logic also, seeds from the original that may not be exactly identical are still the cultivar as long as they look the same.

        Do you know what this means??? It means that tissue culture is not my only option for registering this plant. I can grow it from seeds. Which also means I get to have a lot more fun with this project. I'm not rushed to do things by the book! I can experiment with less valuable plants with less of a risk, because I don't need to clone this exact plant. I will of course try to, but it is not my only sample (which also means I can make more cultures of many different plants).

        I learned this week that cheap aluminum pressure cookers from Walmart may not result in the best sterilization. However, I will just "cook" everything a little longer than I had said before to counteract this. I'm trying to keep my budget under $100, and an $80 pressure cooker would really affect that. So, I will make due for this project. This way everything I'm using is cheap and readily available.

        Here's the current tally of things I had to buy that I am not borrowing from school or weren't already in my house:

        Fertilizer: $6
        Inositol: $11
        Agar powder: $5
        Distilled water: $2
        Sterilization chemicals, spray bottle, and plastic box: $25
        Pressure cooker: $35

        Not bad. This weekend I'm going to try and dispense the liquid into whatever jars I have and sterilize them. The week after I will sterilize and add the samples. Let's hope it works!



        A quick cell phone picture of the D. burmannii I'm hoping to register. As it has aged it's gotten this beautiful red color. It's huge for its species, too, at two inches across. They are normally around one inch in diameter.

        Sunday, March 3, 2013

        Nutrients? Check!

        Just finished the liquid nutrients!!! It looks absolutely disgusting, but I am pretty convinced it should work.

        Wouldn't you love to eat nothing but this for three weeks?

        So I used the recipe I listed in my first post. I had found a 20-20-20 fertilizer (a ratio of Nitrogen-Phosphorous-Potassium, the major nutrients needed by plants), so I diluted it by 1/2. Otherwise everything was the same. I improvised with measuring, because I didn't have 1/8th cups, so it was a bit of a guessing game. Otherwise though, it looks good to go!

        The materials I used: (Front row, left to right) Jack's Classic 20-20-20 Fertilizer, measuring cups, One A Day Women's Multivitamin, Inositol, measuring cup, measuring spoons. (Back row, left to right) 1 gallon distilled water with 1/16 teaspoon of fertilizer, pure distilled water, Domino cane sugar.

        In other news, I finally bought my pressure cooker. It's a six-quart model from Walmart. It was steeper than I imagined at $35, but well worth it. Just look at that quality aluminum! I will be using this to sterilize the nutrient liquid once I add it to the jars and thicken it.

        When I was at Walmart, the guy behind me in line told me that he hated aluminum pressure cookers because they always leak. Not exactly the best encouragement.


        How will I thicken it? Good question! I also bought some corn starch today, and intend to play around with it. I don't know how much will make a good gel, just that I should add it to the mix, heat it so it dissolves, and then distribute to the jars.

        I kind of feel like getting away from procedure now. I am really excited to list my plant as a cultivar (by definition: a race or variety of plants that has been selected intentionally and maintained in cultivation) if I can reproduce it. I emailed the International Carnivorous Plant Society for some input on how to go about registering it. I'm not sure if I made this process very clear in my first blog post, but I've done some more reading to understand propagation.

        Basically, there are two ways a plant reproduces, either by sexual (with another plant) or asexual (without another plant) means. Sexual reproduction will never result in very similar plants, because two plants are exchanging traits. Asexual reproduction can occur either by the regeneration of some plant tissue (This is what tissue culture aims to do. By cutting off a part of a plant and forcing it to grow back, you get an exact clone of the original.) or by self pollination of a flower. But self pollination is tricky. Apparently, some genes that may be hidden in the parent can be revealed again when a plant pollinates itself. Essentially, the seeds aren't exact copies, even though they were formed by one plant. Because my unique sundew can't be cloned by regrowing leaves (except under the controlled conditions of tissue culture) the process of maintaining its traits is really difficult. If the ICPS does not allow me to multiply my plant with self pollinated seeds, than this tissue culture attempt is really my only hope at registering my own plant.

        So no pressure.